2022

• Q Wang, ST Karvelsson, A Kotronoulas, T Gudjonsson, S Halldorsson, O Rolfsson, Glutamine-Fructose-6-Phosphate Transaminase 2 (GFPT2) Is Upregulated in Breast Epithelial–Mesenchymal Transition and Responds to Oxidative Stress, Molecular & Cellular Proteomics 21 (2), 2022
• Wang, Q., Karvelsson, S.T., Johannsson, F., Vilhjalmsson, A.I., Hagen, L., de Miranda Fonseca, D., Sharma, A., Slupphaug, G. and Rolfsson, O. (2022), UDP-glucose dehydrogenase expression is upregulated following EMT and differentially affects intracellular glycerophosphocholine and acetylaspartate levels in breast mesenchymal cell lines. Mol Oncol. https://doi.org/10.1002/1878-0261.13172

2021

• Sigmarsdottir TB, McGarrity S, de Lomana ALG, Kotronoulas A, Sigurdsson S, Yurkovich JT, Rolfsson O, Sigurjonsson OE. Metabolic and Transcriptional Changes across Osteogenic Differentiation of Mesenchymal Stromal Cells. Bioengineering. 2021; 8(12):208. https://doi.org/10.3390/bioengineering8120208
• Aristotelis Kotronoulas, Adrián López García de Lomana, Sigurður Trausti Karvelsson, Marieke Heijink, Randolph Stone II, Martin Giera, Ottar Rolfsson, Lipid mediator profiles of burn wound healing: Acellular cod fish skin grafts promote the formation of EPA and DHA derived lipid mediators following seven days of treatment, Prostaglandins, Leukotrienes and Essential Fatty Acids, Volume 175, 2021, 102358, ISSN 0952-3278, https://doi.org/10.1016/j.plefa.2021.102358.
• Karvelsson, S.T., Wang, Q., Hilmarsdottir, B. et al. Argininosuccinate lyase is a metabolic vulnerability in breast development and cancer. npj Syst Biol Appl 7, 36 (2021). https://doi.org/10.1038/s41540-021-00195-5
• F Jóhannsson, P Cherek, M Xu, Ó Rolfsson, HM Ögmundsdóttir, The Anti-Proliferative Lichen-Compound Protolichesterinic Acid Inhibits Oxidative Phosphorylation and Is Processed via the Mercapturic Pathway in Cancer Cells, Planta Medica, 2021
• Sigurdur Trausti Karvelsson, Arnar Sigurdsson, Kotryna Seip, Maria Tunset Grinde, Qiong Wang, Freyr Johannsson, Gunhild Mari Mælandsmo, Siver Andreas Moestue, Ottar Rolfsson, Skarphedinn Halldorsson; EMT-Derived Alterations in Glutamine Metabolism Sensitize Mesenchymal Breast Cells to mTOR Inhibition. Mol Cancer Res 1 September 2021; 19 (9): 1546–1558. https://doi.org/10.1158/1541-7786.MCR-20-0962
• Sigmarsdottir Thora Bjorg, McGarrity Sarah, Yurkovich James T., Rolfsson Óttar, Sigurjónsson Ólafur Eysteinn, Analyzing Metabolic States of Adipogenic and Osteogenic Differentiation in Human Mesenchymal Stem Cells via Genome Scale Metabolic Model Reconstruction Frontiers in Cell and Developmental Biology, V9, 2021, DOI:10.3389/fcell.2021.642681 
• Sigmarsdottir TB, McGarrity S, de Lomana ALG, et al. Metabolic and Transcriptional Changes across Osteogenic Differentiation of Mesenchymal Stromal Cells. Bioengineering (Basel, Switzerland). 2021 Dec;8(12). DOI: 10.3390/bioengineering8120208.
• UD Teitsdottir, S Halldorsson, et al, Cerebrospinal Fluid C18 Ceramide Associates with Markers of Alzheimer’s Disease and Inflammation at the Pre-and Early Stages of Dementia, Journal of Alzheimer’s Disease 81 (1), 231-244, 2021
• Steinn Gudmundsson, Juan Nogales, Recent advances in model-assisted metabolic engineering, Current Opinion in Systems Biology, Volume 28, 2021, 100392, https://doi.org/10.1016/j.coisb.2021.100392.
• Daliet, O.J., IV; Briem, K.; Brynjólfsson, S.; Sigurðsson, H.B. Combined Effects of External Moments and Muscle Activations on ACL Loading during Numerical Simulations of a Female Model in OpenSim. Appl. Sci. 2021, 11, 11971. https://doi.org/10.3390/app112411971
• Anna L. Ármannsdóttir, Christophe Lecomte, Sigurður Brynjólfsson, Kristín Briem, Task dependent changes in mechanical and biomechanical measures result from manipulating stiffness settings in a prosthetic foot, Clinical Biomechanics, Volume 89, 2021 https://doi.org/10.1016/j.clinbiomech.2021.105476.
• Christophe Lecomte, Anna Lára Ármannsdóttir, Felix Starker, Kristin Briem, Sigurður Brynjólfsson, Comparison Method of Biomechanical Analysis of Trans-Tibial Amputee Gait with a Mechanical Test Machine Simulation, Appl. Sci. 2021, 11(12), 5318; https://doi.org/10.3390/app11125318
• W Xu, A Macdonald, S Brynjolfsson, ÓP Jónsson, W Fu, Environmental Impact Assessment and Sustainability of Microalgae Production, Microalgal Biotechnology, 2021, https://doi.org/10.1039/9781839162473-00380
• Christophe Lecomte, Anna Lára Ármannsdóttir, Felix Starker,  Heimir Tryggvason, Kristin Briem, Sigurður Brynjolfsson, Variable stiffness foot design and validation, Journal of Biomechanics, Volume 122, 9 June 2021, 110440, https://doi.org/10.1016/j.jbiomech.2021.110440
• Zhiqian Yi, Yixi Su, Sigurdur Brynjolfsson, Kristin Olafsdóttir, Weiqi Fu, Chapter 3 – Bioactive polysaccharides and their derivatives from microalgae: biosynthesis, applications, and challenges, Editor(s): Atta-ur-Rahman, Studies in Natural Products Chemistry, Elsevier, Volume 71, 2021, Pages 67-85, ISSN 1572-5995, ISBN 9780323910958, https://doi.org/10.1016/B978-0-323-91095-8.00007-6.
• Barakat, M. Riedel, S. Brynjólfsson, G. Cavallaro, J. Busch and R. Sedona, “Design and Evaluation of an HPC-based Expert System to speed-up Retail Data Analysis using Residual Networks Combined with Parallel Association Rule Mining and Scalable Recommenders,” 2021 44th International Convention on Information, Communication and Electronic Technology (MIPRO), 2021, pp. 248-253, doi: 10.23919/MIPRO52101.2021.9596796.
• Barakat, S. Fritsch, M. Riedel and S. Brynjólfsson, “An HPC-Driven Data Science Platform to Speed-up Time Series Data Analysis of Patients with the Acute Respiratory Distress Syndrome,” 2021 44th International Convention on Information, Communication and Electronic Technology (MIPRO), 2021, pp. 311-316, doi: 10.23919/MIPRO52101.2021.9596840.
• Weiqi Fu*, Bushra Dohai, Diana Charles El Assal, Sarah Daakour, Amnah Alzahmi, David R. Nelson, Ashish Jaiswal, Alexandra Mystikou, Mehar Sultana, James Weston, Kourosh Salehi-Ashtiani*. Protocol to generate and characterize biofouling transformants of a model marine diatom. STAR Protocols, 2021, 2(3), 100716.
• Wenjie Xu, Allyson Macdonald, Olafur Pall Jonsson, Sigurdur Brynjolfsson, Weiqi Fu*. (2021) Environmental impact assessment and sustainability of microalgae production. In: Ajam Shekh, Peer Schenk and R. Sarada (Eds.), Microalgal Biotechnology: Recent Advances, Market Potential, and Sustainability (pp. 380-392). Cambridge, UK, Royal Society of Chemistry.
• Zhiqian Yi, Yixi Su, Sigurdur Brynjolfsson, Kristin Olafsdóttir, Weiqi Fu*. (2021) Bioactive polysaccharides and their derivatives from microalgae: Biosynthesis, applications, and challenges. In Atta-ur-Rahman (Ed.), Studies in Natural Products Chemistry, Vol. 71.  Amsterdam, Netherlands: Elsevier Science Publisher. 

2020

• McGarrity S., Karvelsson S.T., Sigurjónsson Ó.E., Rolfsson Ó. (2020) Comparative Metabolic Network Flux Analysis to Identify Differences in Cellular Metabolism. In: Nagrath D. (eds) Metabolic Flux Analysis in Eukaryotic Cells. Methods in Molecular Biology, vol 2088. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0159-4_11
• Thordis Kristjansdottir, Emanuel Y.C. Ron, Daniel Molins-Delgado, Olafur H. Fridjonsson, Charlotta Turner, Snaedis H. Bjornsdottir, Steinn Gudmundsson, Ed W.J. van Niel, Eva Nordberg Karlsson, Gudmundur O. Hreggvidsson, Engineering the carotenoid biosynthetic pathway in Rhodothermus marinus for lycopene production, Metabolic Engineering Communications, Volume 11, 2020, e00140, ISSN 2214-0301, https://doi.org/10.1016/j.mec.2020.e00140.
• Palsson, K., Gudmundsson, S. & Shetty, S. Analysis of the impact of cyber events for cyber insurance. Geneva Pap Risk Insur Issues Pract 45, 564–579 (2020). https://doi.org/10.1057/s41288-020-00171-w
• Libardo A Lugo, Ragnheidur I Thorarinsdottir, Sigfus Bjornsson, Olafur P Palsson, Hakon Skulason, Skuli Johannsson, Sigurdur Brynjolfsson, Remediation of Aquaculture Wastewater Using the Microalga Chlorella sorokiniana, Water, v12/11, p. 3144. 2020, doi/10.3390/w12113144
• Weiqi Fu, Amphun Chaiboonchoe, Bushra Dohai, Mehar Sultana, Kristos, Baffour, Amnah Alzahmi, James Weston, Dina Al Khairy, Sarah Daakour, Ashish Jaiswal, David R. Nelson, Alexandra, Mystikou, Sigurdur Brynjolfsson, Kourosh Salehi-Ashtiani, GPCR Genes as Activators of Surface Colonization Pathways in a Model Marine Diatom, iScience, V 23, Issue 8, 21 August 2020
• Christophe Lecomte, Felix Starker, Elísabet Þ. Guðnadóttir, Særún Rafnsdóttir, Kjartan Guðmundsson, Kristin Briem, Sigurður Brynjolfsson, Functional joint center of prosthetic feet during level ground and incline walking. Medical Engineering & Physics, V 81, July 2020, Pages 13-21.
• Lars Truttmanna, Yixi Su, Seonki Lee, Michael Burkhardt, Sigurdur Brynjolfsson, Tzyy Haur Chong, Bing Wu, Gravity-driven membrane (GDM) filtration of algae-polluted surface water, Journal of Water Process Engineering, Volume 36, August 2020, 101257, doi.org/10.1016/j.jwpe.2020.101257
• Henriksen, Hanne H.; McGarrity, Sarah; Sigurðardóttir, Rósa S.; Nemkov, Travis; D’Alessandro, Angelo; Palsson, Bernhard O.; Stensballe, Jakob, Wade, Charles E.; Rolfsson, Óttar; Johansson, Pär I. Metabolic Systems Analysis of Shock-Induced Endotheliopathy (SHINE) in Trauma, Annals of Surgery: December 2020 – Volume 272 – Issue 6 – p 1140-1148 doi: 10.1097/SLA.0000000000003307
• Buchweitz, L.F., Yurkovich, J.T., Blessing, C. et al. Visualizing metabolic network dynamics through time-series metabolomic data. BMC Bioinformatics 21, 130 (2020). https://doi.org/10.1186/s12859-020-3415-z
• Steinhaeuser, S.S., Morera, E., Budkova, Z. et al. ECM1 secreted by HER2-overexpressing breast cancer cells promotes formation of a vascular niche accelerating cancer cell migration and invasion. Lab Invest 100, 928–944 (2020). https://doi.org/10.1038/s41374-020-0415-6
• Sigmarsdóttir Þóra, McGarrity Sarah, Rolfsson Óttar, Yurkovich James T., Sigurjónsson Ólafur E., Current Status and Future Prospects of Genome-Scale Metabolic Modeling to Optimize the Use of Mesenchymal Stem Cells in Regenerative Medicine, Frontiers in Bioengineering and Biotechnology, V8, 2020, DOI: 10.3389/fbioe.2020.00239   
• Kotronoulas, A, Jónasdóttir, HS, Sigurðardóttir, RS, Halldórsson, S, Haraldsson, GG, Rolfsson, Ó. Wound healing grafts: Omega-3 fatty acid lipid content differentiates the lipid profiles of acellular Atlantic cod skin from traditional dermal substitutes. J Tissue Eng Regen Med. 2020; 14: 441– 451. https://doi.org/10.1002/term.3005
• Juan Nogales Joshua Mueller Steinn Gudmundsson Francisco J. Canalejo Estrella Duque Jonathan Monk Adam M. Feist Juan Luis Ramos Wei Niu Bernhard O. Palsson, High‐quality genome‐scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities, First published:27 October 2019 https://doi.org/10.1111/1462-2920.14843.
• Jóhannsson F, Árnason NÁ, Landrö R, Guðmundsson S, Sigurjonsson ÓE, Rolfsson Ó. Metabolomics study of platelet concentrates photochemically treated with amotosalen and UVA light for pathogen inactivation.  Transfusion. 2020 Feb;60(2):367-377. doi: 10.1111/trf.15610. Epub 2019 Dec 5.
• Kotronoulas A, Jónasdóttir HS, Sigurðardóttir RS, Halldórsson S, Haraldsson GG, Rolfsson Ó. Wound healing grafts: Omega-3 fatty acid lipid content differentiates the lipid profiles of acellular Atlantic cod skin from traditional dermal substitutes. J Tissue Eng Regen Med. 2020 Mar;14(3):441-451. doi: 10.1002/term.3005. Epub 2019 Dec 30.
• McGarrity S, Karvelsson ST, Sigurjónsson ÓE, Rolfsson Ó. Comparative Metabolic Network Flux Analysis to Identify Differences in Cellular Metabolism. Methods Mol Biol. 2020;2088:223-269. doi: 10.1007/978-1-0716-0159-4_11.
• Buchweitz LF, Yurkovich JT, Blessing C, Kohler V, Schwarzkopf F, King ZA, Yang L, Jóhannsson F, Sigurjónsson ÓE, Rolfsson Ó, Heinrich J, Dräger A., Visualizing metabolic network dynamics through time-series metabolomic data.  BMC Bioinformatics. 2020 Apr 3;21(1):130. doi: 10.1186/s12859-020-3415-z.
• Sigmarsdóttir Þ, McGarrity S, Rolfsson Ó, Yurkovich JT, Sigurjónsson ÓE., Current Status and Future Prospects of Genome-Scale Metabolic Modeling to Optimize the Use of Mesenchymal Stem Cells in Regenerative Medicine. Front Bioeng Biotechnol. 2020 Mar 31;8:239. doi: 10.3389/fbioe.2020.00239.  eCollection 2020. Review.

2019

• Weiqi Fu, David R Nelson, Alexandra Mystikou, Sarah Daakour, Kourosh Salehi-Ashtiani, Advances in microalgal research and engineering development, Current Opinion in Biotechnology, Volume 59, October 2019, Pages 157-164.
• Zhiqian Yi, Yixi Su, Paulina Cherek, David R. Nelson, Jianping Lin,Ottar Rolfsson, Hua Wu, Kourosh Salehi-Ashtiani, Sigurdur Brynjolfsson & Weiqi Fu,  Combined artificial high-silicate medium and LED illumination promote carotenoid accumulation in the marine diatom Phaeodactylum tricornutum. Microb Cell Fact 18, 209 (2019) doi:10.1186/s12934-019-1263-1
• Henriksen HH, McGarrity S, Sigurðardóttir RS, Nemkov T, D’Alessandro A,Palsson BO, Stensballe J, Wade CE, Rolfsson Ó, Johansson PI. Metabolic SystemsAnalysis of Shock-Induced Endotheliopathy (SHINE) in Trauma: A New Research Paradigm. Ann Surg. 2019 Jun 26. doi: 10.1097/SLA.0000000000003307. [Epub ahead of print] PubMed PMID: 31274658
• Arason AJ, Joelsson JP, Valdimarsdottir B, Sigurdsson S, Gudjonsson A, Halldorsson S, Johannsson F, Rolfsson O, Lehmann F, Ingthorsson S, Cherek P,Gudmundsson GH, Gardarsson FR, Page CP, Baldursson O, Gudjonsson T, Kricker JA. Azithromycin induces epidermal differentiation and multivesicular bodies in airway epithelia. Respir Res. 2019 Jun 24;20(1):129. doi:10.1186/s12931-019-1101-3. PubMed PMID: 31234850; PubMed Central PMCID:PMC6591972
• Weiqi Fu, Steinn Gudmundsson, Kristine Wichuk, Sirus Palsson, Bernhard O. Palsson, Kourosh Salehi-Ashtiani, Sigurður Brynjólfsson, Sugar-stimulated CO2 sequestration by the green microalga Chlorella vulgaris (pdf)  Science of the Total Environment (2019)  https://doi.org/10.1016/j.scitotenv.2018.11.120  

2018

2017        

• Exploring Valuable Lipids in Diatoms, Zhiqian Yi, Maonian Xu, Xiaxia Di, Sigurdur Brynjolfsson and Weiqi Fu, , Front. Mar. Sci., 30 January 2017
•  ReconMap: an interactive visualization of human metabolism, Alberto Noronha, Anna Dröfn Daníelsdóttir, Piotr Gawron, Freyr Jóhannsson, Soffía Jónsdóttir, Sindri Jarlsson, Jón Pétur Gunnarsson, Sigurður Brynjólfsson, Reinhard Schneider, Ines Thiele, Ronan M. T. Fleming, Bioinformatics (2017) 33 (4): 605-607.
• Quantitative time-course metabolomics in human red blood cells reveal the temperature dependence of human metabolic networks, Yurkovich JT, Zielinski DC, Yang L, Paglia G, Rolfsson O, Sigurjónsson ÓE,Broddrick JT, Bordbar A, Wichuk K, Brynjólfsson S, Palsson S, Gudmundsson S, Palsson BO. J Biol Chem. 2017 Dec 1;292(48):19556-19564.
• Bioactive Compounds From Microalgae: Current Development and Prospects – Chapter 6, Studies in Natural Products Chemistry, Volume 54, 2017, Pages 199-225, W.Fu, D.R.Nelson, Z.Y, M.Xu, B.Khraiwesh, K.Jijakli, A.Chaiboonchoe, A.Alzahmi, D.Al-Khairy, S.Brynjolfsson, K.Salehi-Ashtiani
• Rolfsson Ó, Johannsson F, Magnusdottir M, Paglia G, Sigurjonsson ÓE, Bordbar A, Palsson S, Brynjólfsson S, Guðmundsson S, Palsson B. Mannose and fructose
  metabolism in red blood cells during cold storage in SAGM. Transfusion. 2017 Nov;57(11):2665-2676. doi: 10.1111/trf.14266. Epub 2017 Aug 21. PubMed PMID: 28833234.
• Halldorsson S, Rohatgi N, Magnusdottir M, Choudhary KS, Gudjonsson T, Knutsen E, Barkovskaya A, Hilmarsdottir B, Perander M, Mælandsmo GM, Gudmundsson S, Rolfsson Ó. Metabolic re-wiring of isogenic breast epithelial cell lines following epithelial to mesenchymal transition. Cancer Lett. 2017 Jun 28;396:117-129. doi: 10.1016/j.canlet.2017.03.019. Epub 2017 Mar 18. PubMed PMID: 28323032.
• Rolfsson Ó, Sigurjonsson ÓE, Magnusdottir M, Johannsson F, Paglia G, Guðmundsson S, Bordbar A, Palsson S, Brynjólfsson S, Guðmundsson S, Palsson B. Metabolomics comparison of red cells stored in four additive solutions reveals differences in citrate anticoagulant permeability and metabolism. Vox Sang. 2017 May;112(4):326-335. doi: 10.1111/vox.12506. Epub 2017 Mar 31. PubMed PMID: 28370161.
• Bordbar A, Yurkovich JT, Paglia G, Rolfsson O, Sigurjónsson ÓE, Palsson BO. Elucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics. Sci Rep. 2017 Apr 7;7:46249. doi: 10.1038/srep46249. PubMed PMID: 28387366; PubMed Central PMCID: PMC5384226.
• Magnusson S, Baldursson BT, Kjartansson H, Rolfsson O, Sigurjonsson GF. Regenerative and Antibacterial Properties of Acellular Fish Skin Grafts and Human Amnion/Chorion Membrane: Implications for Tissue Preservation in Combat Casualty Care. Mil Med. 2017 Mar;182(S1):383-388. doi: 10.7205/MILMED-D-16-00142. PubMed PMID: 28291503.
• Konstantinos Vavitsas, Emil Ostergaard Rue, Lara Kristin Stefansdottir, Thiyagarajan Gnanasekaran, Andreas Blennow, Christoph Crocoll, Steinn Gudmundsson and Poul Erik Jensen. Responses of Synechocystis sp. PCC 6803 to heterologous biosynthetic pathways. Microbial Cell Factories 16(1), 2017. 
• Steinn Gudmundsson, Lucia Agudo and Juan Nogales. Applications of genome-scale metabolic models of microalgae and cyanobacteria in biotechnology. In Microalgae-Based Biofuels and Bioproducts (R. Munoz and C. Gonzales eds.) Elsevier 2017. (pdf)
• Magnusson S, Baldursson BT, Kjartansson H, Rolfsson O, Sigurjonsson GF, Regenerative and Antibacterial Properties of Acellular Fish Skin Grafts and Human Amnion/Chorion Membrane: Implications for Tissue Preservation in Combat Casualty Care, Military Medicine, 2017 Mar;182(S1):383–8.

2016         

• Paglia G, D’Alessandro A, Rolfsson Ó, Sigurjónsson ÓE, Bordbar A, Palsson S, Nemkov T, Hansen KC, Gudmundsson S, Palsson BO. Biomarkers defining the metabolic age of red blood cells during cold storage. Blood. 2016 Aug 23. pii:blood-2016-06-721688. [Epub ahead of print] PubMed PMID: 27554084.
• Paglia G, Sigurjónsson ÓE, Bordbar A, Rolfsson Ó, Magnusdottir M, Palsson S,Wichuk K, Gudmundsson S, Palsson BO. Metabolic fate of adenine in red blood cells during storage in SAGM solution. Transfusion. 2016 Aug 5. doi: 10.1111/trf.13740 [Epub ahead of print] PubMed PMID: 27491795.
• Rolfsson Ó, Middleton S, Manfield IW, White SJ, Fan B, Vaughan R, Ranson NA,Dykeman E, Twarock R, Ford J, Kao CC, Stockley PG. Direct Evidence for Packaging Signal-Mediated Assembly of Bacteriophage MS2. J Mol Biol. 2016 Jan 29;428(2 PtB):431-48. doi: 10.1016/j.jmb.2015.11.014. Epub 2015 Dec 1. PubMed PMID:26608810; PubMed Central PMCID: PMC4751978.
• Magnusson S., Winters C. DPM, Baldursson B.T. PhD MD, Kjartansson H. MD, Rolfsson O. PhD, Sigurjonsson G.F. MSc. Acceleration of Wound Healing Through Utilization of Fish Skin Containing Omega-3 Fatty Acids. Todays’s Wound Clinic. 2016 May; 10(5)
• Weiqi Fu*, Basel Khraiwesh, Hongbing Liu, Lei Kai. Advances in biotechnology for sustainable development. BioMed Research International, 2016, 2016: 7154916
• Kumari Sonal Choudhary, Neha Rohatgi, Skarphedinn Halldorsson, Eirikur Briem, Thorarinn Gudjonsson, Steinn Gudmundsson, Ottar Rolfsson. EGFR Signal-Network Reconstruction Demonstrates Metabolic Crosstalk in EMT. PLoS Comput Biol 12(6): DOI:10.1371/journal.pcbi.1004924.
• Sarah McGarrity, Haraldur Halldórsson, Sirus Palsson, Pär I. Johansson and Óttar Rolfsson, Understanding the Causes and Implications of Endothelial Metabolic Variation in Cardiovascular Disease through Genome-Scale Metabolic Modeling, Front. Cardiovasc. Med., 18 April 2016.
• Bordbar, A., Johansson, P. I., Paglia, G., Harrison, S. J., Wichuk, K., Magnusdottir, M., Valgeirsdottir, S., Gybel-Brask, M., Ostrowski, S. R., Palsson, S., Rolfsson, O., Sigurjónsson, O. E., Hansen, M. B., Gudmundsson, S. and Palsson, B. O. (2016), Identified metabolic signature for assessing red blood cell unit quality is associated with endothelial damage markers and clinical outcomes. Transfusion. doi: 10.1111/trf.13460
• Peter G. Stockley, Simon J. White, Eric Dykeman, Iain Manfield, Ottar Rolfsson, Nikesh Patel, Richard Bingham, Amy Barker, Emma Wroblewski, Rebecca Chandler-Bostock, Eva U. Weiß, Neil A. Ranson, Roman Tuma & Reidun Twarock, Bacteriophage MS2 genomic RNA encodes an assembly instruction manual for its capsid, Bacteriophage, Volume 6, Issue 1, January 2016

2015         

• Rohatgi N, Guðmundsson S, Rolfsson O. Kinetic analysis of gluconate phosphorylation by human gluconokinase using isothermal titration calorimetry. Febs Letters doi:10.1016/j.febslet.2015.10.024
• Zhiqian Yi, Maonian Xu, Manuela Magnusdottir, Yuetuan Zhang, Sigurdur Brynjolfsson and Weiqi Fu,  Photo-Oxidative Stress-Driven Mutagenesis and Adaptive Evolution on the Marine Diatom Phaeodactylum tricornutum for Enhanced Carotenoid Accumulation Mar. Drugs 2015, 13(10), 6138-6151; doi:10.3390/md13106138
• Aurich, Maike Kathrin; Paglia, Guiseppe; Rolfsson, Ottar; Hrafnsdottir, Sigrun; Magnusdottir, Manuela; Stefaniak, Madgalena K.; Palsson, Bernhard O.; Fleming, Ronan MT; Thiele, Ines, Prediction of intracellular metabolic states from extracellular metabolomic data, Metabolomics, June 2015, Volume 11, Issue 3, pp 603-619, DOI: 10.1007/s11306-014-0721-3
• Weiqi Fu, Kristine Wichuk, Sigurður Brynjólfsson, Developing diatoms for value-added products: Challenges and opportunities, New Biotechnology, Available online 13 April 2015, doi:10.1016/j.nbt.2015.03.016.
• Óttar Rolfsson and Bernhard O. Palsson, Decoding the jargon of bottom-up metabolic systems biology, BioEssays, Article first published online: 11 MAR 2015, DOI: 10.1002/bies.201400187
• Giuseppe Paglia, Peggi Angel, Jonathan P. Williams, Keith Richardson, Hernando J. Olivos, J. Will Thompson, Lochana Menikarachchi, Steven Lai, Callee Walsh, Arthur Moseley, Robert S. Plumb, David F. Grant, Bernhard O. Palsson, James Langridge, Scott Geromanos, and Giuseppe Astarita, Ion Mobility-Derived Collision Cross Section As an Additional Measure for Lipid Fingerprinting and Identification, Anal Chem. 2015 Jan 20; 87(2): 1137–1144. 13. doi: 10.1021/ac503715v
• Tommaso Pacini , Weiqi Fu , Steinn Gudmundsson , Antonio Eugenio Chiaravalle , Sigurdur Brynjolfson , Bernhard Ø. Palsson , Giuseppe Astarita , and Giuseppe Paglia, Multidimensional analytical approach based on UHPLC-UV-ion mobility-MS for the screening of natural pigments, Anal. Chem., 2015, 87 (5), pp 2593–2599, DOI: 10.1021/ac504707n
• Steinn Gudmundsson and Juan Nogales,  Cyanobacteria as photosynthetic biocatalysts: a systems biology perspective, Mol. BioSyst., 2015, 2015,11, 60-70, Advance Article, DOI: 10.1039/C4MB00335G
• Giuseppe Paglia, Ólafur E. Sigurjónsson, Óttar Rolfsson, Morten Bagge Hansen, Sigurdur Brynjólfsson, Sveinn Gudmundsson and Bernhard O. Palsson, Metabolomic analysis of platelets during storage: a comparison between apheresis- and buffy coat–derived platelet concentrates, Transfusion, Volume 55, Issue 2, pages 301–313, February 2015 first published online: 25 AUG 2014. DOI: 10.1111/trf.12834.
• Skarphedinn Halldorsson, Edinson Lucumi, Rafael Gómez-Sjöberg, Ronan M.T. Fleming, Advantages and challenges of microfluidic cell culture in polydimethylsiloxane devices, Biosensors and Bioelectronics, Volume 63, 15 January 2015, Pages 218–231, DOI: 10.1016/j.bios.2014.07.029
• Magnusson S, Baldursson BT, Kjartansson H, Rolfsson O, Sigurjonsson GF, Regenerative and Antibacterial Properties of Acellular Fish Skin Grafts and Human Amnion/Chorion Membrane: Implications for Tissue Preservation in Combat Casualty Care, Military Medicine, 2017 Mar;182(S1):383–8.

2014         

• Heinken, A., Khan, M. T., Paglia, G., Rodionov, D. A., Harmsen, H. J. M., Thiele, I., Functional metabolic map of Faecalibacterium prausnitzii, a beneficial human gut microbe, J Bacteriol, (2014).
• Neha Rohatgi,  Tine Kragh Nielsen, Sara Petersen Bjørn, Ivar Axelsson, Giuseppe Paglia, Bjørn Gunnar Voldborg, Bernhard O. Palsson, Óttar Rolfsson, Biochemical Characterization of Human Gluconokinase and the Proposed Metabolic Impact of Gluconic Acid as Determined by Constraint Based Metabolic Network Analysis, PLOS ONE,  June 2014 9 (6) DOI: 10.1371/journal.pone.0098760
• Giuseppe Paglia, Ólafur E. Sigurjónsson, Óttar Rolfsson, Soley Valgeirsdottir, Morten Bagge Hansen, Sigurður Brynjólfsson, Sveinn Gudmundsson, Bernhard O. Palsson, Comprehensive metabolomic study of platelets reveals the expression of discrete metabolic phenotypes during storage, Transfusion, 2014;54:2911-2923, DOI: 10.1111/trf.12710
• Giuseppe Paglia, Jonathan P. Williams, Lochana Menikarachchi, J. Will Thompson, Richard Tyldesley-Worster, Skarphédinn Halldórsson, Ottar Rolfsson, Arthur Moseley, David Grant, James Langridge, Bernhard O. Palsson and Giuseppe Astarita, Ion Mobility Derived Collision Cross Sections to Support Metabolomics Applications, Anal. Chem., 2014, 86 (8), pp 3985–3993, DOI: 10.1021/ac500405x
• Wichuk K, Brynjólfsson S, Fu W. Biotechnological production of value-added carotenoids from microalgae: Emerging technology and prospects. Bioengineered 2014; 5:10 – 9; http://dx.doi.org/10.4161/bioe.28720
• Sahoo S, Aurich MK, Jonsson JJ and Thiele I (2014) Membrane transporters in a human genome-scale metabolic knowledgebase and their implications for disease. Front. Physiol. 5:91. doi: 10.3389/fphys.2014.00091
• HS Haraldsdóttir, I Thiele, RMT Fleming, Comparative evaluation of open source software for mapping between metabolite identifiers in metabolic network reconstructions: application to Recon 2, Journal of Cheminformatics 6 (1), 2, doi:10.1186/1758-2946-6-2
• Weiqi Fu, Giuseppe Paglia, Manuela Magnúsdóttir, Elín A Steinarsdóttir, Steinn Gudmundsson, Bernhard Ø Palsson,  Ólafur S Andrésson and Sigurður Brynjólfsson; Effects of abiotic stressors on lutein production in the green microalga Dunaliella salina, Microbial Cell Factories 2014, 13:3 doi:10.1186/1475-2859-13-3, (2014).

2013         

• Tepper, N; Noor, E; Amador-Noguez, D; Haraldsdottir, HS; Milo, R; Rabinowitz, J; Liebermeister, W;Shlomi, T, Steady-State Metabolite Concentrations Reflect a Balance between Maximizing Enzyme Efficiency and Minimizing Total Metabolite Load, PLOS ONE, 8  (9) DOI: 10.1371/journal.pone.0075370,  2013
• Sun, Y., Fleming, R. M. T., Thiele, I., Saunders, M. A., “Robust flux balance analysis of multi- scale biochemical reaction networks”, BMC Bioinf, 14, 240 (2013)
• Einar B. Magnusson, Skarphedinn Halldorsson, Ronan M.T. Fleming, and Kristjan Leosson,  Real-time optical pH measurement in a standard microfluidic cell culture system, Biomedical Optics Express, Vol. 4, Issue 9, pp. 1749-1758 (2013) http://dx.doi.org/10.1364/BOE.4.001749
• Elad Noor, Hulda S. Haraldsdóttir, Ron Milo, Ronan M. T. Fleming, Consistent Estimation of Gibbs Energy Using Component Contributions,PLOS Computational Biology doi: 10.1371/journal.pcbi.1003098
• Fu, W., Guðmundsson, Ó., Paglia, G., Herjólfsson, G., Andrésson, O.S., Palsson, B.Ø., Brynjólfsson, S., “Enhancement of carotenoid biosynthesis in the green microalga Dunaliella salina with light-emitting diodes and adaptive laboratory evolution“, Applied Microbiology and Biotechnology, 97(6), pp 2395-2403, (2013) DOI 10.1007/s00253-012-4502-5
• Edwards, L.M., Thiele, I., “Applying systems biology methods to the study of human physiology in extreme environments“, Extreme Physiology & Medicine, 2:8.
• Sahoo, S., Thiele, I., ”Predicting the impact of diet and enzymopathies on human small intestinal epithelial cells”, Human Mol Genet., Hum. Mol. Genet. (2013) doi: 10.1093/hmg/ddt119
• Thiele, I., Swainston, N., Fleming, R.M.T., Hoppe, A., Sahoo, S., Aurich, M.K., Haraldsdottir, H., Mo, M.L., Rolfsson, O., Stobbe, M.D., Thorleifsson, S.G., Agren, R., Bölling, C., Bordel, S., Chavali, A.K., Dobson, P., Dunn, W.B., Endler, L., Hala, D., Hucka, M., Hull, D., Jameson, D., Jamshidi, N., Jonsson, J.J., Juty, N., Keating, S., Nookaew, I.,  Le Novere, N., Malys, N., Mazein, A., Papin, J.A., Price, N.D., Selkov Sr., E, Sigurdsson, M.I., Simeonidis, E., Sonnenschein, N., Smallbone, K., Sorokin, A., van Beek, J.H.G.M., Weichart, D., Goryanin, I., Nielsen, J., Westerhoff, H.V., Kell, D.B., Mendes, P., Palsson, B.O.,”A community-driven global reconstruction of human metabolism”, Nat Biotech, doi:10.1038/nbt.2488 (2013).
• Nogales, J., Gudmundsson, S., Thiele, I., “Towards systems metabolic engineering in cyanobacteria: Opportunities and bottlenecks“, Bioengineered, 4(3):1-6 (2013).
• Heinken, A., Sahoo, S., Fleming, R. M. T., Thiele, I., “Systems-level characterization of a host-microbe metabolic symbiosis in the mammalian gut“, Gut Microbes, 4(1):1-13 (2013).
• Thiele, I., Heinken, A., Fleming, R.M.T., ”A systems biology approach to studying the role of microbes in human health”, Curr Opin Biotech, 24(1):4-12 (2013).
• Rolfsson, O., Paglia, G., Magnusdottir, M., Palsson, B. O., Thiele, I., “Inferring the metabolism of human orphan metabolites from their metabolic network context affirms human gluconokinase activity”, Biochem Journal, 449(2):427-35 (2013).

2012          

• Mednis, M., Aurich, M.K. “Application of string similarity ratio and edit distance in automatic metabolite reconciliation comparing reconstructions and models“,
  Biosystems and Information Technology (2012) Vol.1(1) 14-18.
• Aurich, M. K., Thiele, I., “Contextualization procedure and modeling of monocyte specific TLR signaling”, PLoS ONE 7(12): e49978 (2012).
• Fu, W., Magnusdottir, M., Brynjolfson, S., Palsson, B.Ø., Paglia, G., “UPLC-UV-MSE method for quantification and identification of major carotenoid and chlorophyll species in algae”, Anal Bioanal Chem, 404:3145-3154 (2012).
• Paglia, G., Palsson, B.Ø., Sigurjónsson, Ó.E., “Systems Biology of Blood Cells: Can it help to extend the expiration date?“, J Proteomics, 76:166-167 (2012).
• Fleming, R. M. T., Thiele, I., “Mass conserved elementary kinetics is sufficient for the existence of a non-equilibrium steady state“, J Theor Biol, 314:173–181 (2012).
• Thiele, I., Fleming, R. M. T., Que, R., Bordbar, A., Diep, D., Palsson, B. O., “Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage“, PLoS One, 7(9):e45635 (2012).
• Fu, W., Gudmundsson, O., Feist A. M., Herjolfsson, G., Brynjolfsson, S., Palsson, B. O., “Maximizing biomass productivity and cell density of Chlorella vulgaris by using light-emitting diode-based photobioreactor”, Journal of Biotechnology.  Volume 161, Issue 3, 31 October 2012, Pages 242–249.
• Nogales, J., Gudmundsson, S., Thiele, I., “An in silico re-design of the metabolism in Thermotoga maritima for increased biohydrogen production”, Int J Hydrogen Energ, 37(17), 12205–12218 (2012).
• Sahoo, S., Franzson, L., Jonsson, J.J., Thiele, I., “A compendium of inborn errors of metabolism mapped onto the human metabolic network.”, Mol BioSyst, 8 (10), 2545 – 2558 (2012).
• Paglia, G., Magnusdóttir, M., Thorlacius, S., Sigurjonsson, O. E., Gudmundsson, S., Palsson, B. O., Thiele, I., “Intracellular metabolite profiling of platelets: evaluation of extraction processes and chromatographic strategies.”, J Chromatogr B Analyt Technol Biomed Life Sci, 898:111-20 (2012).
• Sigurdsson, G., Fleming, R.M.T., Heinken, A., Thiele, I., “A systems biology approach to drug targets in Pseudomonas aeruginosa biofilm”, PLoS One, 7(4): e34337 (2012).
• Haraldsdottir, H., Thiele, I., Fleming, R.M.T.,“Quantitative assignment of reaction directionality in a multicompartmental human metabolic reconstruction”, Biophys. J., 102(8):1703-1711 (2012).
• Nogales, J., Gudmundsson, S., Knight, E.M., Palsson, B.O., Thiele, I. “Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis”, PNAS, 109(7):2678-83 (2012).
• Paglia, G., Hrafnsdóttir, S., Magnúsdóttir, M., Fleming, R. M. T., Thorlacius, S., Palsson, B. O., Thiele, I., “Monitoring metabolites consumption and secretion in cultured cells using Ultra Performance Liquid Chromatography Quadrupole-Time of Flight Mass Spectrometry (UPLC-Q-ToF-MS)“, Anal Bioanal Chem, 402(3):1183-98 (2012).
• Fleming, R. M.T., Maes, C. M., Saunders, M. A., Ye, Y., Palsson, B. O.,“A variational principle for computing nonequilibrium fluxes and potentials in genome-scale biochemical networks”, J Theor Biol, 292C:71-77 (2012).